Scaffold Ga0134314_101204

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134314_101204

Scaffold Ga0134314_101204

Overview

Basic Information
Taxon OID	3300014711 Open in IMG/M
Scaffold ID	Ga0134314_101204 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2072
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017297	Metagenome	241	Y
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134314_1012042	F017297	AGG	MKITEQKNGNYTTFERVAHNGYYIVKLYKRGELADKIMADSYRAAREYLRCFNLIAKNG*
Ga0134314_1012046	F088497	AGGTGG	MKVWQELWDAMKANPSEWIETTEKMYWDMLEVLPPRAQTQSAFLVGEANHHNSAGEAVYACFCETGGKYRARYMTLKEFKGFA*

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