Scaffold Ga0134314_100012

Overview

Basic Information

• Taxon OID: 3300014711
• Scaffold ID: Ga0134314_100012
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24442
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025975	Metagenome / Metatranscriptome	199	Y
F048255	Metagenome / Metatranscriptome	148	Y
F072099	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134314_10001223	F025975	AGGAG	MEQSYNNPASRNTMRAAGGALKNGAAIGGGGNQTQGKGEIPGKVSVPMPGTNTTQSKETGGKAKTPVGFNSGIINGMI*
Ga0134314_10001224	F048255	GGAG	MATTITIELADDGTITVTSPEMTEPYQCQSADECAQFIGKMLAEETGEAPEEQATEGKEDYGQMWNEEAASRKPQPGLMA*
Ga0134314_10001225	F072099	N/A	LEIIMKYRNEPRIVLLARVDFPLVELGGKRLDTLREDFYDNAVNLQNNGRKPAQLISPYDIACSGGEPYAVWS*