Scaffold Ga0181519_10009299

Overview

Basic Information

• Taxon OID: 3300014658
• Scaffold ID: Ga0181519_10009299
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7465
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y
F025900	Metagenome	199	N
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181519_1000929911	F025900	AGCAG	LKSQLQENRVPVSRTRKPSKKKNSLAPSSKEARQKIRRWSFVVEVTRGDTIKTFQPPALTIGNMTSARAAADTILNDIASLDQFKDCKVVVNPKAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKQDTSCPCHQIEDEAARQVEFDRHVTELLGKYVMEEQQATRRQHMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEESPAEQVNTDPFPDGEFGKEAA*
Ga0181519_1000929915	F009261	AGGAGG	MLLTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTAKRKDATLKWIDKNKGISLLGLETVNFGIHGITNPNSVMFALGNTILNIFMLWVYLPFRMASAAKKHTASVLKGVA*
Ga0181519_100092993	F031336	AGGAGG	MLNGDVFVIMPPKDPSWFSDVSQSVSLFFWEHSDLIPLLLAEVALALLITVGFIWWERRKTSKQTVQVDELERMYSTPASIPLPR*
Ga0181519_100092996	F039920	GGAG	MIDVQALDRTGRRQVLHGFIRRIWQEGNNAVLRDAHQNLPGFTALMERNVRVMRPGVALEKTLQAVLAGPAKPKFRRAGPQTNHSSVRFIGLDKLKF*
Ga0181519_100092997	F044872	GGAGG	MNTGLLNTFASMVKGNLIVVDAIKAALSKFEGQPPSDDQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFGTCMRLARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA*
Ga0181519_100092999	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRASQNFALQTKQNREITDGSGQTMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTITVLELAVTPGPVAVEAAAEALTTAA*