Scaffold Ga0180007_10899326

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0180007_10899326

Scaffold Ga0180007_10899326

Overview

Basic Information
Taxon OID	3300014656 Open in IMG/M
Scaffold ID	Ga0180007_10899326 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	520
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location Name	Sweden: Oskarshamn
Coordinates	Lat. (^o)	57.4344	Long. (^o)	16.66	Alt. (m)		Depth (m)	171
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089778	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180007_108993261	F089778	N/A	KYIADSVKNVTSWPQFVSEAQMLDVKPWLTDGLLLEIIAQASTLPTTISAANQTLLDGGTYTYQSKTYFFQGLKTCIAYYAFARFTNRTAFNYTAAGIVQKDSDFSTPASSKDIQRLETEARLTGDALKCEIVTFLNRNSVSYPLWTGKCSDSSCSHSRPFIVLGN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.