Scaffold Ga0180007_10020467

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180007_10020467

Scaffold Ga0180007_10020467

Overview

Basic Information
Taxon OID	3300014656 Open in IMG/M
Scaffold ID	Ga0180007_10020467 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5319
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location Name	Sweden: Oskarshamn
Coordinates	Lat. (^o)	57.4344	Long. (^o)	16.66	Alt. (m)		Depth (m)	171
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030981	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180007_100204676	F030981	AGGAGG	MAMGKVRSCSSRCHNAKGTRCKCWCGGAFHGKDGAGAANRAALAQAVLPEELLEQHGFKEGETRYIEQRELPLEVA*

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