Scaffold Ga0181516_10341633

Overview

Basic Information

• Taxon OID: 3300014655
• Scaffold ID: Ga0181516_10341633
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 762
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003186	Metagenome / Metatranscriptome	502	N
F010139	Metagenome / Metatranscriptome	308	Y
F070324	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181516_103416331	F070324	AGGAGG	MANISELLNGWGFGKQTAIGTANLVAAIWRHTNLNT
Ga0181516_103416332	F010139	AGGAG	MDSVFMRSPEGEVKEVEATTEKLTILMSAGWHQVPAPAAAQKPVVVAKEEEQHG*
Ga0181516_103416333	F003186	N/A	FLGEWVTALQSCPDLVTAIGGDGNNIRAFMEGLANDNNLRLAILQMPPGSILIAWNGTTPRRLSGGALHFAHRFALYLRAPEQDSTATYADLFWLLVSARPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*