Scaffold Ga0181516_10008402

Overview

Basic Information

• Taxon OID: 3300014655
• Scaffold ID: Ga0181516_10008402
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5927
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F012316	Metagenome	281	Y
F047435	Metagenome	149	N
F093078	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181516_1000840210	F047435	AGGAG	MSKLTLLAVLGLIYIGVVRLAYFTISVFFILFFGMSVWELIRTARQPAKHHFAAQ*
Ga0181516_1000840211	F093078	AGGAG	MKLIFGFLLFVAAVAMTGGLYLVIRKPEQKKTDLEKLESVCRQIFCRIRQLDDYLARIYTTAFFRMIPSSRKERSNVSEKQSSGSDLPHESGVIPAE*
Ga0181516_100084027	F012316	AGAAG	MAVSPWLLSLLEGEGNMSTTLIDQPTGPMHRCGKVWEGLRSLGTRGISAVNLWRRHQDQNALERSLARIIETANGHRAKGLPKGSPAYFVLRDKADAKIQAFARKWDVDIATIEAQAPALADLDTLCIPDRQIPAGLRLLAALLGTILSLVLLGVASGLVHAGHDWVMRFVGR*
Ga0181516_100084028	F005296	GGAG	MAPWLLWFLPSFEAGFWSALIAGKLRDRGKTRELLVYGRPAQTCLPVIDERLRKAAGTPTKSQAFVARRIGAGLRWLANTRAMEYAILLGLKRVWPKGQTISTEVKMCL*
Ga0181516_100084029	F009261	GGAGG	MILTPSNTGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMRTKQKHVHNVLKGVA*