NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181516_10002351

Scaffold Ga0181516_10002351


Overview

Basic Information
Taxon OID3300014655 Open in IMG/M
Scaffold IDGa0181516_10002351 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13519
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017934Metagenome / Metatranscriptome238Y
F074173Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181516_100023516F074173AGGAGMTTEWNAEEMRMSGFADNPNPAETLALSADSLGQRYPQHYPQAQDSLGEPLGVREVAELLGCSDWTVRHRHLPHGLPHFRSGPSGKLVFFRRQVIAWILNQQRKGGR*
Ga0181516_100023518F017934GAGGMTESNSNLQPHELDEALRQLVLARVSAINGNVLARLATVSDDLDAGSLRAALGGLDGLEREIATMRNFLLLLP*

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