Scaffold Ga0134319_100112

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134319_100112

Scaffold Ga0134319_100112

Overview

Basic Information
Taxon OID	3300014652 Open in IMG/M
Scaffold ID	Ga0134319_100112 Open in IMG/M
Source Dataset Name	Alkaline hot spring microbial communities from Galicia, Spain - Lobios hot spring
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The University of A Coru?a
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28840
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (67.74%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Alkaline Hot Spring → Alkaline Hot Spring Microbial Communities From Galicia, Spain

Source Dataset Sampling Location
Location Name	Spain: Lobios, Galicia
Coordinates	Lat. (^o)	41.86113	Long. (^o)	-8.1062	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099502	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134319_10011210	F099502	AGGAG	MAEKANQESAIGTIIGWGSLGIFALWFAYQVASPLLIGEQWAEKQQDAIELVKNSKPLGNDTLYDMIRAYSLKAKENDFFVGEFSWSAIQKDGPEYEVTLLWTEGEQKKVALWRVNLENKEVRPQGDAASLPQRLAAGPPKKPAGS*

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