Scaffold Ga0180008_1073034

Overview

Basic Information

• Taxon OID: 3300014613
• Scaffold ID: Ga0180008_1073034
• Source Dataset Name: Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1356
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location

• Location Name: Sweden: Oskarshamn
• Coordinates
  • Lat. (^o): 57.4344
  • Long. (^o): 16.66
  • Depth (m): 171

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053745	Metagenome	140	Y
F064378	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180008_10730341	F064378	AGGA	MAIVVNNINTGGAVVKVGGTVSGSANADGYYDMEADGTDVGCTQGGVTVTYTLETSDIFCDQITSPVDVAITGETATVEFEMLESDAENIKLVLGSQATSKDGTAYYVGVGGITTVTFQPLELTITDNDTGYLTKWLFYKTIAGGIETNFERENPTAVGVTFTAYADTDHSSGK
Ga0180008_10730343	F053745	AGGAGG	MPTEVKVTHHSHGQIGKKPSYLIELEQKFKRWTGIDDPEIKEAIKDISGDLWGELRKLESQLCTEIEKRKIPDDFKEFTKARIRDVWRDIIGHQKIGMDKLCIVIRKYIKEDD*