Scaffold Ga0134394_100686

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134394_100686

Scaffold Ga0134394_100686

Overview

Basic Information
Taxon OID	3300014560 Open in IMG/M
Scaffold ID	Ga0134394_100686 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS51_12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22808
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (12.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134394_10068631	F074964	N/A	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVASLAKDKKRLVAVCSQMLPKVDDTFVKFSLYSKVYKDSKVDKEKGIEAKTADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134394_1006865	F090484	N/A	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRVTDSTFVAKRYRVNGVQLTLGCGKVSLPKNRILIKIKKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVGKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVVAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISTTVDKDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*

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