NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134386_101080

Scaffold Ga0134386_101080


Overview

Basic Information
Taxon OID3300014559 Open in IMG/M
Scaffold IDGa0134386_101080 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS64_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8232
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F075481Metagenome119N
F089590Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0134386_1010804F042095AGGAGGMKLICKDTNKGSITFFTKGKYAFRGVSRDDTIDDVPDPILDYNNYNETIEFYSNTPGMCEVDWGDGNKEQFPFVKARSGSIYGQYRLMFRRRDISYRKNPDSHPWWFYKEDGSEYVPAPNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPSDMWNYFDINTLPFFEVDKINPNITNFDFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITRFNVNCSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYSAVYPTENQRPTGVEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA*
Ga0134386_1010806F089590AGGMKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRLTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0134386_1010807F075481AGAAGMRLRISLRAIFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLSADIVITEREFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGIEDIDKKTDIEHEDVDDKKESRWPIAIISISVLLILLVLIYLLKKMKVL*
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