Scaffold Ga0134386_100399

Overview

Basic Information

• Taxon OID: 3300014559
• Scaffold ID: Ga0134386_100399
• Source Dataset Name: Human fecal microbial communities from obese patients in Germany - AS64_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hohenheim
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25477
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (35.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F078006	Metagenome	117	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134386_10039919	F057001	AGG	MTSKELNKVQSEVKKASEKTLTSAIKAWCNLFKSGKEINEILNDNDIKVDKAIVPALVALAKEKEMVIQLCKEILPRVNDTFCAYKEVEREYYDKQDQANNSKLPLDKVNSIAVLGNTHKRFGYCEPVAYSDTDSAPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNDR*
Ga0134386_10039926	F083452	GGA	MSGRVKIKSKNKDKKPKIDVFKVIEDRFKNMNELRDLIDMDPSKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK*
Ga0134386_10039945	F058555	N/A	MKLVYSQKIKSTMGTKIGILHIMKSNFDKILTERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTKDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNKNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVNIGHLRLSYRGTIMHIIIAEDYIRDVFLGVKGTEMSKAG*
Ga0134386_1003996	F085718	AGGAGG	MVIEFDFEIYKNGDYDKVYLRNGKEPRILCDNGKGNRPIVVMVEDDNADDYIILRYNETGRRNINSQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSSVSYYVDKLEEDKCFDELCEKIRVKRDRIYNMEIISLSDDEATV*
Ga0134386_1003998	F078006	N/A	MDNVLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYTMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCRVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*