Scaffold Ga0134450_100332

Overview

Basic Information

• Taxon OID: 3300014552
• Scaffold ID: Ga0134450_100332
• Source Dataset Name: Human fecal microbial communities from obese patients in Germany - AS56_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hohenheim
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36710
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (26.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F058555	Metagenome	135	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134450_10033211	F075481	AGAAG	MRLRISLRAIFCLGLSLFLSSCGSRRQVSETSIDSRLISRIETMIDEVIDRKVVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGVNKTRNDIKDLDNKTNIKSKDVDDKKESRWPIVWIVAGILMILLVLVYILKKIKVL*
Ga0134450_10033212	F089590	AGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0134450_10033215	F042095	N/A	MTKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIRHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCEMTSFPIVDIPGLEFLVVSHTLYVNDGIPADKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPPDMWNYFDINTLPFFEVDKINPNITNFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAVHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGERNQFYGLAVSMYGSQYPYENQRPSGTXXXRNGR*
Ga0134450_10033221	F089591	AGG	MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLKEVSHIDDPESTSFGLPDDYLWFSNIKGAFSYKGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFR*
Ga0134450_10033222	F089592	N/A	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFIDALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNVDYLLDIWDRSLGGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKTKKVKDVKKKKDVGEGDKVNTEE*
Ga0134450_10033233	F058555	N/A	MGDLHRLPIHPNNLFRIDETCIFAANKKNTMETKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSCIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIIHIIIAEDFIKDVFLGGKRARDE*
Ga0134450_1003326	F106193	N/A	MGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP*