Scaffold Ga0134446_101297

Overview

Basic Information

• Taxon OID: 3300014540
• Scaffold ID: Ga0134446_101297
• Source Dataset Name: Human fecal microbial communities from obese patients in Germany - AS44_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hohenheim
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9342
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134446_10129715	F057001	AGG	MISKEINKVQNEVKKSNEKTLTGAVKTWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKSEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNER*
Ga0134446_10129722	F080673	N/A	MDEIMELQDEALLYLRDNITKDEAYYILATDKEMLAILIADKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASCIGINMYFRRQDANAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL*
Ga0134446_1012974	F102167	N/A	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNEKMIDEYVAVLMIKSYDKITESYNLTTFSFHDKDMDGLRRLVSNAIMAVGLRNNPMTGDGNTAIK*
Ga0134446_1012978	F083452	N/A	MQGYWIIDMSGRVKIKSKDKDKKPKIDVFKVIESRFKNMNELRDLIDTDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGTKLSIDLIDKYVKRK*