Scaffold Ga0169876_102006

Overview

Basic Information

• Taxon OID: 3300014529
• Scaffold ID: Ga0169876_102006
• Source Dataset Name: Human fecal microbial communities from infant at 4 months in Denmark - 78_4M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5615
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169876_10200610	F078006	N/A	MDNILKRAAAELKEAGCRVLAWQDDAYNRSWSKDDYTTLYYAFPDSPNIGRLSHGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0169876_10200612	F085718	AGGAGG	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRNINSQSSLDLMLSIKEREPELWIVVISYIDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSNVSYYVNRLKEDECFDELCEKIRVKRDRIYNMEIISLSDDKATV*
Ga0169876_1020064	F080673	N/A	LATIGMNMNETELLRLQDEALFYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL*