NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182021_10661669

Scaffold Ga0182021_10661669


Overview

Basic Information
Taxon OID3300014502 Open in IMG/M
Scaffold IDGa0182021_10661669 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1252
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075712Metagenome118Y
F091934Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0182021_106616691F091934AGGAMRNLIQPITKEVGIITIRGRDYHMQTISYGSRNQVHVFRKGALHLRGLVFETQADYDAWKSGMHQLDLPFGEQVPRP
Ga0182021_106616693F075712AGGAGMTKATTVVVTYQQFARGVGASDRITLEASLPWHKQYVKLSAEKQSEWRYDFVLNYVIGRLDCTQKQAETICGKTRTERTAEQERAVNCGGKRFADHISRTGRTSGNKPTVVLPKQLVSTIASEIIEAGLTRAQFNELLAQLREAVSFK*
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