Scaffold Ga0182021_10455914

Overview

Basic Information

• Taxon OID: 3300014502
• Scaffold ID: Ga0182021_10455914
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1521
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022814	Metagenome	212	Y
F053781	Metagenome	140	Y
F085148	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182021_104559141	F022814	N/A	WPMPLPEEIEFVVTPDPEVMGTYLLDTGGDYAHTITISSGRCSHFYTVLTTLAHECVHMSFYKQKGDKWMQHGKPFRTRCKMVANELGFDPLEL*
Ga0182021_104559144	F053781	GGA	MLKLTEEFLILKLLCKMYDDALNRKDYTQMLEISVDIAESADKLEQMTVDHINGH*
Ga0182021_104559146	F085148	N/A	IEYLAQSYIAIAKRYKDWQIVKDLIEKNKDTEEAVKKRIKEILRK*