Scaffold Ga0182021_10000643

Overview

Basic Information

• Taxon OID: 3300014502
• Scaffold ID: Ga0182021_10000643
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38286
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (71.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F001471	Metagenome / Metatranscriptome	688	Y
F007333	Metagenome / Metatranscriptome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182021_1000064313	F000858	GGAG	MSGNGYLFAAYAAAWIIHIAYLSTLVSRYSKLKREIEDLKKK*
Ga0182021_1000064322	F007333	N/A	MEEESVQEEVHKARSLGLSVALGAAMGAAMGAATGHMGIWVAGGIALYIAITVVGGAWKRDHN*
Ga0182021_1000064337	F001471	AGGAG	MMKTRHVVVALISLALALPAFGKTSKNTYPVPCSEMWGAVKDVLSNAENYNVEESNDTLMAATYKVKHAAHVTVSGAVLQRANHVSLVSKGTECEMQVKSNYSGFEHNDSSDFRKRVEESFAKLKGAKPAEPAPPAAPAK*