Scaffold Ga0182024_11915852

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182024_11915852

Scaffold Ga0182024_11915852

Overview

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_11915852 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	659
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053728	Metagenome	140	Y
F088082	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_119158521	F088082	N/A	ALERAQRQGAEKDQPEGSRFAVFSDTSLKTMARDLRLASADRPDVETFGVRKP*
Ga0182024_119158522	F053728	GGAG	VTAIFEWLGRYFNLAPRDTGPKSFMALANEPRTRSKLKTSSLYIIQTDFEVTPESYINLQTMLDEVRDKYGLDFLILEPGFKLKRFDDY*

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