NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10803624

Scaffold Ga0182024_10803624


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10803624 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1146
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069141Metagenome / Metatranscriptome124Y
F095040Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_108036241F069141GAGMEADLHAATKMLQGHGHTVRPYIRYGTLWFEVDGNMLATRQEMLELADGVYSLQEL
Ga0182024_108036242F095040AGGAGMYTYMCCRCIRCEAQIVLEDRADTNLLHKPPRPRPGREACPYCRAVFVPQSYYVRESGSPLALRA*

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