Scaffold Ga0182024_10289731

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10289731
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2171
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_102897312	F014894	AGGAGG	MSIGIPGISMYFDHTQVKPFIKDHSKKAKELFDERVVPAVIRGTCKALEVVANNTADVHDYLIAKIKTKQSA*
Ga0182024_102897313	F045709	GGAGG	MNLTPSQKGSFLAGVGLWVLIWASVWKADDIGEAMRIQRWFNSTRCLRWIGQHKSTSLLGTELINYGSHGLDPLGVSFSLGGTLVNVLVIYLVLPCLETLLHRRGTAGATQ*
Ga0182024_102897314	F070426	AGGAGG	MILELMAATEASVLSASWIRRSRMRRRQILLGGSTSEINLPFLDRYLRQQTANPTRLQTIAAKKLAAGCRRVVHTQAFELLVLKLIQSASRRSRRKSEISKVEVIL*
Ga0182024_102897315	F036810	AGGAG	MSQPEGTRVSAWIRLQSFAAAVQLSIERRSFERKLETIVRAALAHQSGGLAAGNRQYKLLTAQVESICVDFTSRWNIDPNLLDAQIPAIRKLNALANPAPKPEPVVLVSLGVVAAVALFFLIGVLAGLTSVGYHLLGGR*