Scaffold Ga0182024_10246726

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10246726
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2398
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002929	Metagenome / Metatranscriptome	520	Y
F036259	Metagenome	170	Y
F100369	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_102467262	F036259	GAG	MFGAHRRGFAWKEIAKVLHMTRAVARATFWREIKRSRSKSVESQPSGIVIQDESDLDTPKLRKPGASR*
Ga0182024_102467263	F100369	GAG	VVLQYLQALDVCDLLTQSSERQAEFASATLFRFGLDTLATGFWIACVATDDWLCGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVNDSKRTLLKDVLNPATHGDALVNVVRIGSALAQGKNWAQYLSTRMNELTHNFAVLIRELAGIDLESMAGKYMAAARQD*
Ga0182024_102467264	F002929	N/A	VKEIWNVHSSCFIEPEKLIVLLHDLAARVGTASDEHEYGDKQAVWLENGRKVLDYMEADERFSAASFHDSMEERGIAVNRNDLITLIDNMRSLSKQWRGSIGKHGELLFYIDAC*