Scaffold Ga0182024_10062980

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10062980
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5705
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009276	Metagenome / Metatranscriptome	320	Y
F028885	Metagenome / Metatranscriptome	190	Y
F051278	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100629805	F009276	AGTAGG	MGVVIIPFDYEQLPESERKTIVPICISSVDRHGNPIAAVWFEKGVVPVQDQLRGLARIRLGDVQRVSELAEITVHKLWERHGEDAGIWPARRVLVRAMWEARDLAAGNSAWRIKHTVSLAMDSLERDLYNNGIADPRHYEEIYQQQLLLDLVERRIDQDHRQEIREVFKMLRQGYSWDEIGQRLGNRKSEAVKKRFWRWMRHNFPTKS*
Ga0182024_100629806	F051278	N/A	MKGETPEHQWNRLQREYQKSVQASYPNPKRYDCPGTDVLRALAARSARSEDLEEDRQWKHVIHCGPCYHEYLNLRERCRLGTEATIQRESR*
Ga0182024_100629809	F028885	GAGG	MWILVLLLELLGRKNFLRFLACWMLIMAFFLYCFVHDAFDQPGSTQRVAVPRIERRPVQPVSTSTSDH*