Scaffold Ga0182024_10055842

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10055842
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6176
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1005584210	F093562	AGGA	MSVRSGLVAEAEKQISNPFVLCTLVSQRTRQLMMRANTILSTAQLVDFALNELTAGALKFEYPMPRCPPFIRAGSRVEEIRGGLESVAVRVISAALLYVEAT*
Ga0182024_100558428	F014771	AGGAG	MKERGSITKLLRNQRPGYILGEDGCMVAFDESSLDGPEVQKLSVGDWVEYDELQPTQGRRAAHIRKISSTRGNRLFQ*
Ga0182024_100558429	F019704	GGAGG	MKRRIKVRELMQSEGLRGEVVQLFHLRNTGIIHGNDGYDVTFDEESLALGLGYSELGLGLKVSYGIFFATGAKIPTAINVQPAFGGQTETAANAENMSAARAGGMGVV*