Scaffold Ga0182024_10034655

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10034655
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8520
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000281	Metagenome / Metatranscriptome	1382	Y
F001247	Metagenome / Metatranscriptome	737	Y
F002319	Metagenome / Metatranscriptome	571	Y
F055952	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1003465512	F055952	AGGA	MRRLFLSFSHPSPILLSGVLVLSTHFLWAQRTLPLEKVPIQLVDTPAPFARVSEDQTRLTYRRLPPTFEQNQRQTDSEMRFFPHYPGYYLLPVNTDASLYTATRTAELSSKWRTFAPTYGKVPHETTFPIGNPEHFGLRIPWADSIITRMGQQAKTHPHIARVFTALKPRL*
Ga0182024_100346553	F001247	GGAGG	MKTKTWKVISNTGKQADLESGLEKKEVQKPTHISASEFVHWLGPESRIDDDPLRSLFKL*
Ga0182024_100346554	F000281	AGTAG	MQNPVKERIVKLRDEIAQISEANCLYIGAAKRYTVLRGDHERRVQRLQDILDELVSLTDWKKF*
Ga0182024_100346557	F002319	GGAG	MSSQAVNLQVTASIPIDCDFWPEDDGWKGLSKSLLVTVRGSSFEDAKKNMATELQVHIERILREHPKRITQRIA*