Scaffold Ga0182024

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10027063 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014501 Open in IMG/M

Scaffold ID

Ga0182024_10027063 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10053
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10053

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F032938	Metagenome / Metatranscriptome	178	Y
F036810	Metagenome	169	Y
F045057	Metagenome	153	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1002706314	F032938	AGAAG	LIQNDSHTKKEMIKKKYLVVSYDDDQQQWFWDYVAAKTPEDAVAHICERRPYVIAADAASLSQVQVIARDLKSRPISRIIHQFDRDTATPEKEKGGSEQ*
Ga0182024_1002706315	F014894	AGGA	MSIGVPGISFYFDHCQVKPFIKDQSKKAKEVFHERVVPAVLRGTCKALEVVANNTAGAHDYLISKAKTKKSA*
Ga0182024_1002706316	F045709	GGAGG	VNLTPSQKGSFLAGVGLWVLIWASIWKADDIATAMHIQRWFNSSRCIRWIGQHKSTSLLGTELFNYGTHGLDPLGVSFSLGGTVVNVLFIYLFLPCLEKLLRHRGTGIATIQ*
Ga0182024_1002706317	F070426	GGAGG	MLIELIVATEASVLSTSWIRRSRLRRRQILMGGNAPEINLPFLDRYLRQQTTNPSRLQTFAAQKFAAICRHAVHTQAFELLVLKLIQSESRRSRRESEISKVEVIL*
Ga0182024_1002706318	F036810	AGGAG	MTQLEGTHVSAWIRIRSFAAHKYKAVQLSIERRSFERKLEKIVRTALAHQSVGLPAGHPQYKLLREQANTLCSEFTSRWNIDPDLLDAQIPAIRKLKSLADPAPKSESGVLVSLGAVGAVALFFVMGILAGLTSVGYHLIGGR*
Ga0182024_100270638	F045057	AGGAGG	MRDTSIRESLTDKQWDRIFYGCPGAWGGNKPEPNLPGSIVIAGSSILAAGQFFNRHRLRVLCAKPPLPEIWCSDGGIILVIGLRQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182024_10027063

Overview

Ecosystem & Geography

Associated Families

Sequences