Scaffold Ga0182024_10024436

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10024436
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10741
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005732	Metagenome / Metatranscriptome	391	Y
F015922	Metagenome / Metatranscriptome	251	Y
F094239	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100244363	F094239	GGAG	MDFLVGYIATASVSINWEALIAIGTIALALIALVSAIYAIKQLSDFRRESRIEHLMALVDQFERDPMATHRRTLGATRAPNGQLISLDLNNPSPELHDVMNFFEHMGYLLDGKYLNLEDVSVEFHYWILHVWSDAKKLIKSEQAENKIYYEFFEKMVTRLLNYDRPRTGTLELPSEAEIADFYAEESHLPSGSPIPRQRRLKRRSG*
Ga0182024_100244366	F015922	GAG	MNEKPKDYYRVFAPGVPNVRAISERFTNEADAKRLKREILMAYPAANVRIRKNG*
Ga0182024_100244368	F005732	N/A	MGRFSPTRQHGDCEEIDTPSTAYGRRRRNWIDAHGAVPAGQVVDVRCGNKHCIALRHAYVRPRVEQLGKYRKIAARVHRLKVGQHFDVPGIGIDERSRNRFRSGLYAAARLDKVSVRGLPNGSVRVTKVGAWGIVGA*