Scaffold Ga0182024_10024390

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10024390
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10753
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F014420	Metagenome / Metatranscriptome	263	Y
F036885	Metagenome	169	Y
F038890	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1002439011	F001596	N/A	DARNHASPAEVVACFQDQRNVLGRLAFLITGDRATADQAVVQACEITLRGNSPFRDWLLEWAKAATIASAISNGTEAIRICEAAHKDRRCPHVEHLSQSDAEERAVVLDFVLGADAKTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHDSQVNPVEENQDASHAV*
Ga0182024_100243902	F014420	GGAGG	MGESAENLRNWRGLYRAALFETDTSKLPGRIEEARKALIFRSRELFKTSPNYDGEAEAIDDALYALQALENCLKSNTKVRRRAPRAS*
Ga0182024_100243906	F038890	GGAGG	MFQITAETCRSFTFAEVLIMAAMNVETIRLSFECGVRADSPAAQGKYARHVVRTGIPKAPQL*
Ga0182024_100243908	F036885	GGGGG	MTDKKDRERVIAEITLSHLMRLGNEQGCPVSREQALAFLNQEGRAFDMWKHMMQAAEEFIAGSLFQHSFNAGGHNGFASRP*