Scaffold Ga0182024_10018747

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10018747
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12847
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F038518	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100187471	F038518	N/A	AAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGNAIQ*
Ga0182024_100187472	F003764	GAG	MQIQLDSPYVHDENPAALLAGAEIEVAGLHRCLKIVRLWSQSSAVPRLRREEIIEEEQRLASLYAAILQETGSAFGIDKAYELKVRIEAACILDDWECPPAEQGLLFPILNEPMTEASPATARK*
Ga0182024_100187474	F003942	GGAG	MLGHRLNPTIHRYEDVELVEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNVSATGPKLPDGTTAQPGMAKAIEIQRQAGHTIYADHLSAMLYGTGLNPARS*
Ga0182024_100187475	F003389	GGA	MQVTVWSVAADDDNGTYASVHETESAAYRRLIQSTVDADNKDEIAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKLDVPTAPASADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPGEIDELCERLNMGFCN*