Scaffold Ga0182024_10018009

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10018009
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13193
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F017017	Metagenome / Metatranscriptome	243	Y
F032348	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1001800911	F017017	GGAGG	MLNVPQLAQIKARDPYLYESLKQVVGAVNSIGRATGVDPSGSIAAPAQIGSVSVTAADGIFDIALTDNSPVRRGVFYFLESDTEPSFSSPHVYFLGSSRNLRASLGNQTLYWRGYSQYIGSVPSTPVPFGSPPTAVTGGGSAGPPPQPSSGSGTATAQQGGSGFGVSQTLTLDSTLS*
Ga0182024_1001800912	F032348	N/A	MIIREYADADRNALRAMHAAQGFAYKLPDPADPLFLVRAVVEDEGRPRMAGLLRLTSEAYLLADPRDGSPRQRWQWLLALHDATRQAAAARGLDDAQAFLPPRVARAFGRRLERLGWRRDPWTCYTRKL*
Ga0182024_100180098	F000696	GGAGG	MPVVGSSAYNTAGPITSLVRSLLNDAAGNLFTDGVLLPYANAAYHKVQRALGNVQAASFLNDDVLLVVSALSAADPSVQVSITDATAPPNQLPTDLLVPLKVWERPNGSGDDFVEMTDLTNHGGLPSQPQGLSLIYWEWRTEGIYFVGAAQDTQIRLRYQKTYPDFVDSTSPVLIRNAQEAIAFFTAAMAAASRGAPQAQRWDEVGADALEDLLVRATQREQHTVRRRRPYTWRQGYGSLL*