Scaffold Ga0182024

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10017289 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014501 Open in IMG/M

Scaffold ID

Ga0182024_10017289 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13561
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

13561

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (60.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012495	Metagenome / Metatranscriptome	280	Y
F035459	Metagenome / Metatranscriptome	172	Y
F084683	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1001728910	F012495	GGAG	MNNLVIIVPIVIALSGGLLWLLLPQRNTSASPASSFHPEINETLPSPRHYKHFRQIRQALCAADTEYLMKFAPPQVAKQALRERRAVARGFLKGLHEDFSSLTKLGRIIAALSPEVNRRQETERLLLTGKFQILYGLILLRLSMGNTPIEQLEHLTGLVGSMAARMDEAMAKIAVLSASQQITGSLGS*
Ga0182024_100172896	F035459	N/A	MVRQPQYMLALFLSFVMLSANLFAARMPGQTGGDAAEEFKKTAAELSDTRLSGGEESQARMEKALAYLDSTAITFLNVSAGANLDEANRSLSGLISRNPPVGENYRLLKFGGAPAVYAMVINFGLGGPAAVRIYAGAAGHYAVAARIDHFAQKDFLDSDIEAVVVSSSEPVFVTVSGRTDDLSTGAFTAWHFDGHGVAALWSSDLLQQSSYEAEENGFRLAYCSQVDEDRPSQCLKMTRDLYRYQAGEWKRVETADMPPPKPTAK*
Ga0182024_100172899	F084683	GGA	MNLLEHVLYWLTFSFLIVLSGLILVRKVQRILPFFALYAWLLLTGTIVLYLVYGHFGFNSSPSYYSYWGSILANASARSLAIVELCRYGLRAYQGIWSLIWRVLTALSIYFLAHAIVDAWGQPDRFAIYGMTLDRDLAFASIVILTVLLLFRNYYGIALEPMQKAISLGICIVCAVDVIGNTILRNLFTGYLFSWLSSSQKALWPTLEPQVHLVRDVWSTVHLFSFMFSIGIWCFALRKPLPAPTESPVLLPAGVYRDLSPAINIRLATFNDRMVELLKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182024_10017289

Overview

Ecosystem & Geography

Associated Families

Sequences