Scaffold Ga0182024_10012875

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10012875
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16459
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100128751	F004157	N/A	ASTGQAASPQGLVIEPEELPGTYPQGTYQVRLHARGNYVPVLRWKLERGALPQGIKLEDDGTLHGQAQRAGEFQFTVSVRDGGQPQQAVQKQFTIKVVEAIAVAWKVPAHVNVSRIEGSVEVSNSTADDMNLTFDVKAVAENGRATEIGYQHYVLTKGTIGMALPFGETLPHGAYVVYVNVVGEVPQRNAIYRQQLQTARALQVVPGP*
Ga0182024_1001287511	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNAEMAKSVLPTAVNGPQQPIRIPAPPVVPQAQPVRAAGWDDTAKRWP*
Ga0182024_100128752	F003631	N/A	MMELLLNIAWVLLALPAYWLWRRNAEDTRGCGLKPLQCLLALGCVLVLLFPVISATDDLHAMRAEMEDSATSKRAVRQAGGEKNSAWVNRLQAPLAAVASSGWLALPEVRRYEFVVSSVRPLARQSVLHAGRAPPFFLLG*