Scaffold Ga0182024_10011983

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10011983
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17256
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000949	Metagenome / Metatranscriptome	823	Y
F003215	Metagenome / Metatranscriptome	500	Y
F011166	Metagenome / Metatranscriptome	294	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1001198313	F003215	N/A	MLGSILLYAAMGEVLGSGTGVADPSLKYVFTTAGVAIVGIIFVVRRTLVLRTAENLASHPEDALTLSHWKSGYIATYALCEALALFGLVLRFTGCNFQQSLPFYIGGFVLLILFGPREPVRTLREG*
Ga0182024_1001198315	F011166	GAG	MGKIFSFCKSGFAWGKGLHREAALDSARNVLAVIGAATVLADFGTIKAWLILPMLAVAFLIWFLDYERHFRGTAVEEAKMPSVPSGTRSL*
Ga0182024_100119839	F000949	N/A	MAPQTSSPRQRSDLIAYVLAALAGIATGWVDVVVNDLLFTALLVLAACMAMGLLRPRWPWRWVIVVVSFIPVAELAAYLVMTVKPTRGQMYGSFLTALPGTAGAYGGAVMRQVVDNLRQGK*