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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014501 Open in IMG/M |
| Scaffold ID | Ga0182024_10006915 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24691 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001450 | Metagenome / Metatranscriptome | 692 | Y |
| F003810 | Metagenome / Metatranscriptome | 467 | Y |
| F004287 | Metagenome / Metatranscriptome | 445 | Y |
| F011314 | Metagenome / Metatranscriptome | 292 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182024_1000691517 | F001450 | GAG | VERAGGTNWYGEANFRVVWGASRLTWIGGRWTDRDSNGNILREAIETRRVPKYLPLNRWHIERWAPRESYGSPEQWFAQTTEVEDGRRIAALGPYPSRGEYEHCFTLESTGGEFIALTPAACDWIIRAIEWSRRQPRRRLRGAIAARETRRARDWDRDADALLDDAVPAFHGAPFVGIAAG* |
| Ga0182024_1000691518 | F004287 | AGGA | MTTTTASSLRGRILVDTRSTGDTAATVTIASISDQDWYISRTHGVYHILACAKGEGYSLLLITSRGDAIDLGDNRKFPFTISARDIAEDLLQDLHDHGVFVCAGARPTPDELGVVAARRDEFYQRLVTDGDTMWARGHSFREISDLHRRAAIALGAEREWAYVPVRMADCPACGEKVKPGVAVCRHCSAILDQEKAAKHGLGLRTATMDERRAGSDGAEKKGRV* |
| Ga0182024_1000691521 | F003810 | N/A | MHIPESAHFWALFVAGHGLHVLKRASLSAQSVLSGTKTRTEWLRTNAMNLTIRFFINAAAFSYWLAHPDAATHAIGSVGIPANFTLEPGHATAAMFGLSGDSLVDWAAAKIPFLQKEIPLLKSN* |
| Ga0182024_100069156 | F011314 | AGGAG | MSASKTTIGYAVQLGGIGALVLGAVLSVHHAAIAAAFLGGAAAFYIGEKIRTLA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |