Scaffold Ga0182024_10006773

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10006773
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24988
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F002076	Metagenome / Metatranscriptome	596	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000677329	F002076	AGGA	MQNEYRHCLDKLAGAAPKRKAALIRSLLPGIEAALNSGQSLKDIWEALGNEGLHMSYRVFHKTVSRSRKMKKPTAPSWGKQDKPSGVQELQETKVEALEERDPLANLRRLEEDRPGFHWRGTQGLKTMVHGTEVSSDKNKR*
Ga0182024_1000677330	F000673	GGA	MCHPWKWRKYMAKPRIERSLLFPSKEFRERVRQASKDRGFRSEQAFILAACESEMRKGENTEATAQFEARVAATLTNLAKQVQGLQTLAHAQVALIDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKEMVADE*
Ga0182024_100067736	F000321	N/A	MDRDSKSRQSPSPKTVEIMAKRRNAHFGVYNVRLLNSLDKLLRDKPRHMGELSTSINDALLAINLDTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVARKRKCSMNQLVNSALLAYYSKTGEGKLKTPTKRQGLSMRSYDTMSDSERRELHQMLSGLSAVQPVSADVAEPDGTYYEYDRNLKATVKVTPDGERTPVAGLEAPFERAPQKGPLKTIREEMTP*