Scaffold Ga0182024_10004724

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10004724
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31034
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042611	Metagenome	158	N
F049116	Metagenome / Metatranscriptome	147	N
F052724	Metagenome	142	Y
F060142	Metagenome	133	Y
F069068	Metagenome	124	Y
F089494	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000472411	F052724	GAG	MMGLVTAQVDELIRERRILLDRLATLGLGGPLFNSPSWPDPSENTAEKAEPIDSEAEEMEKLMNLRRRPSKLADALTRKAYRDYNRAQAGPSVKWIPKVEAPKAQAQKLDTMTAALDEAEAFGKKQA*
Ga0182024_1000472414	F069068	AGGAG	MAHTRLITLNGSAGAFVAVSATQVTRRVQIIEDGSANGGTGQGIAYQFNDGSATPFSTTYTIEPQSEPIVLGTPVPQGGGYGMVLGTPPDNSGGYTIAATLLINLRSASTNTTIVRVTEFD*
Ga0182024_1000472421	F089494	GGA	MATPRVKLATPGTIDAQILEQLAEVKGKVDESLEQGRENGNELKMLRRELGLDGQHGRLPIVEATLIRHEVRMEKGETRIDKLEIGNSEANGKAKLVATSLALLGGGAGGALIALIAHLLGVH*
Ga0182024_100047243	F060142	AGGAG	MAVSGAIIDYTGAAGERNFTVFIQLTFSGSFTTGGDPLNLATLTNPNGLDVEGVFELPLSLGPAVYLEDIGGYYVQPKVPGSTVNAFLINVYAPGGSIVSGAYNTAVTSGNVILTMQKRRV*
Ga0182024_100047244	F049116	AGG	VSWTLGQVKARVRNLLDDPQGSYLTDDFVVPLISEVYDDANSQLASTQSSWDIAVVEVPGIPPGTPNLGPYQTGTGPLAALTDQPLRIDWKPAGDDPSYYRLVTNYEVLPDLQPREGIAGWEFRSEVIWLTNSSIAVDLRVRGEFGPQPLTSDESVLISHPRIGYVVAYGTAALIATVRGNDAWTRQYEQKALEGMDEIMEQLVRAEQGQLRRAGRQTGRRGSYGH*
Ga0182024_100047246	F042611	N/A	MSHIVPKATQRFLTTYGGRNPFGKPRWRLLVGSDRLVKESGVYRDWAPGLSTAEKGGLNFEPNPHAPGCNFSRHDNRPIRVVTEMREVKKYPHAPGWVLEKWFPASSYGTQAEWYSYKAVDGFTPMLGPYPECGDYEMIFGPWPKAPTTDTLQDLIAQYSAGINNRRGSAESRAQEYLLRLQYEEEQAEAKRKIEYDAMMRDHISPLHSSSLAASRWRQDLARRTGNANEHIGIL*