Scaffold Ga0182024_10003428

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10003428
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37778
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027299	Metagenome	195	Y
F038361	Metagenome / Metatranscriptome	166	Y
F060714	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000342815	F060714	GAG	MSEARDCVVKLVDDHGVEHSVRVRAESVYEAALRGLQKLERVGWENDGSQIGSVAVEVWEEPTIHRVNVRRMLEWLNRQGRTPRDESRKNRLRAIIK*
Ga0182024_1000342816	F038361	GGAG	VGEPAKKAWVNTEAAEQKSTMLTAQVLWACHAWNATPEEAARQVVADLYEHLSRGGPVQVHVEELDGTEHMLEVTAKR*
Ga0182024_100034284	F027299	AGGAG	MLKWLLKSLLIAALLVPFSVALPFCALSLCRTPGGAQFLFWTGPWSCCVLVLFYSQLSASKFWLGAEHVRQWRAAYGGLLHTSMRATAWMFGGLFFSYVAEFLMLFLVRPSPSGRALLPFFTYSPLGFCWLWRRCRA*