Scaffold Ga0182024

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10002852 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014501 Open in IMG/M

Scaffold ID

Ga0182024_10002852 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42160
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (51.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42160

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (51.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F007294	Metagenome / Metatranscriptome	353	Y
F021908	Metagenome / Metatranscriptome	216	Y
F023143	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000285216	F000451	N/A	MPRFQTVVKSARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQAAAPLKPGQSGRRGYPDYKSARGLKPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRRQTASQIAAFNNRRERQWGVSPHDRQAVLAAFQARPFVMLKAA*
Ga0182024_1000285219	F021908	N/A	LDGCPACGADWKAIDVSHGPGCPKNLLEEAMDTPNGALVRRCFRILNAKNIGLTITLADITEEEFRVLELIETERQERINGGDHGKRK*
Ga0182024_1000285222	F023143	GGCGG	MRKHMDTVHMRSPEGEVKEVEATTEALTPLMVAGWHQVPAPAAEPEAVGPKPAAPAGEEK
Ga0182024_1000285223	F003186	N/A	VINPRIILGEWVTALQSCPDLVAALGGGDPANIRAFMEGLATDNNVRLAILQMPPGSILVAWHGTTPRRLTGGALHFAHRFSLYLRAAEQDSGGTYADLFWLLVSAIPSGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0182024_1000285224	F002261	N/A	MSDWSAIDAAANAVMQQTFGEPVVYQPVQAGAEVGAPRTITAVRHPRMPEESGAMASFEEISVNPSDFANPPAKGDWVTAWGSQYVVTALRQPDAYGMIALTLLQRS*
Ga0182024_1000285229	F007294	N/A	LGEADVALTIPQLQANLDAVNQALGNPTLKVRFPDGREVTYRSVDDLRKAKAEIEEDIRQTSGKPGSRVTLAQHQRGDGPTGPTLDDRW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182024_10002852

Overview

Ecosystem & Geography

Associated Families

Sequences