Scaffold Ga0182024

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10002817 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014501 Open in IMG/M

Scaffold ID

Ga0182024_10002817 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42520
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (76.19%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

42520

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (76.19%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001632	Metagenome / Metatranscriptome	660	Y
F003673	Metagenome / Metatranscriptome	474	Y
F004329	Metagenome / Metatranscriptome	443	Y
F025707	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100028171	F025707	N/A	VLTLVLVPLGALVGFLVVVTALSSDPLSWAGPVPLITALGIGAVLTWVIKKYSVKETIAHPLAFAAYVGWTLVSSLFLTPLALCTMDSADWGTRTKERQDDQHEEQPEVPLGNTTR*
Ga0182024_1000281729	F003673	AGGAGG	MKKLVILVVLAMSVPAPSFGADIIGHSADIVGHSAKVAGKDSYKAAKTSAKDTAKAGKAVVRFLF*
Ga0182024_100028173	F001632	AGGAG	MFLLRWKFVMTSSLAMASSLFLFSVPTFAVDPQALTVNSTDQQAYCAYVMEQAEAQRDLLRTPDAIVGMTQPETGLPLQVVAGASVGLSAMKKAGLTMDAARKNCELYRATTGAQQDIQYAVPSLEKEALRNRLVLIEQASKSLDALMEKTSKMVENQNATRLMLFSLQTTKIKLDADEADTQSKITALYTPPLSDKPLKELVAEKQKSEADEQRAQDRLSRQNNWDVALSVGVHQQVNPVDYGAQPYGAVSVSYNLASRAINKHLDRTAEAYDEWKKVQEGDVVRNMEILRQQLVDTMSVQESKLGSLQEESKQIDRSLQLVGDPDTSAAFDFHNQLTAARLLLEVENGDASFRISRLREYMAKNY*
Ga0182024_1000281741	F004329	GAG	MQTSLRRGNRRRSVASLLTGIATLGLYAFQFGDRNELNKMPFTKVQALAEDLPKARSLAKQGNIDFLVGQAVPGKTVTLRGEVTDANCYLGTHTHAYDHAFCAKLCAAAGAPLLFVSDQGGQVYLVLNQQNGIRLPSDVLDRIGVPGIVVKGKVLESDGMHALAIERLAQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182024_10002817

Overview

Ecosystem & Geography

Associated Families

Sequences