Scaffold Ga0182024

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10002245 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014501 Open in IMG/M

Scaffold ID

Ga0182024_10002245 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48513
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (72.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

48513

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (72.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000419	Metagenome / Metatranscriptome	1160	Y
F001010	Metagenome / Metatranscriptome	807	Y
F002004	Metagenome / Metatranscriptome	605	Y
F002288	Metagenome / Metatranscriptome	574	Y
F002929	Metagenome / Metatranscriptome	520	Y
F004032	Metagenome / Metatranscriptome	456	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000224537	F002004	GAG	MRKIPNSSRRLDEHISRALNKIKKPSTAEEITELLNRDLEPEDRPFQTKEVAERLGRTGDAVLTLYWSRTRPRR*
Ga0182024_1000224538	F001010	AGGA	MAVRIEMQNTGDPRARGEILAIIEHLLHDRPGEWRVSIVGSHANDNWEMKVEGPEGFERSYTLVGDAGEHQPAAIGNLVVKLLPARKPC*
Ga0182024_1000224542	F002288	GGA	MGEAGGVHKRRMFRWPKEARELVSEYKERTSRSQEYTDTGRRMLVTKLAAISGHPRDACLRFLRELGVNQKRAYREWTKPEQQRLLDLIITMPVEEAAKILRRPAGSVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLRSRALTTAGTKTNIIHPDDFCQFVKEHGRAVASRRLTYEALWFVQNYVFPPSHAELLSVRGTYKRHDAGDETDANTESQSACGSEEDGGQEG*
Ga0182024_1000224547	F000419	N/A	MERLKVYLFGATVLFASFGMGEVVYRLLFSEFDGITDRIPIEILFGLVFAWLATKFGGGVYRNRKERSARLNFIWARNHQIRGAVEGITPLAHPSKNQQSIRVIREEVERIEWALKEILPG*
Ga0182024_1000224553	F004032	GGA	MNTSSSKSLDSRAWRDLYKAALFEVDNARLPERIAQAEKALALRARELFHIAGDNIEEEQALDDTMYALRALRNTSQTSHCVSHRSEAA*
Ga0182024_1000224554	F002929	AGGTGG	MSQSFRAVKEIWNVHSSCFIGPEKLMVLLHDLAARVGTTSDEREYGDNKAVWLEDGNKVLDYMEADERFSAASFHDSMEEQGIAFNKNDLSALIDNMRSLSKEWRSSIGKHGELVFYIDAC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182024_10002245

Overview

Ecosystem & Geography

Associated Families

Sequences