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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014501 Open in IMG/M |
| Scaffold ID | Ga0182024_10001974 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51721 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (76.19%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000335 | Metagenome / Metatranscriptome | 1276 | Y |
| F000451 | Metagenome / Metatranscriptome | 1124 | Y |
| F003186 | Metagenome / Metatranscriptome | 502 | N |
| F021908 | Metagenome / Metatranscriptome | 216 | Y |
| F023143 | Metagenome / Metatranscriptome | 211 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182024_1000197411 | F021908 | AGG | LDGCPACGADWKAIDVSHGPGCPKNLLEEAMDTPNGALVRRCFRILNAKSIGLTITLADVTEEEFRVLELIEAERQEQMRAGGADDQISRQAAS* |
| Ga0182024_1000197413 | F000451 | GAGG | MARFQTVIRHARFVYSPYTATEMQGFAQVLADSIRVRIQSGQNIYDQAAAPLKPGLPGRRGYPDYKAARGLNPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEARSGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA* |
| Ga0182024_1000197415 | F000335 | GGTGG | MPGNLVQSEPNGVMPASLCTAFTELREYAQLQNQYHDGTIQRSQLALTSRRTFRLSKRLSTSLLSTLYSFWVSQNAGLTPFAFYNPFDVASGQQIGSNHDPTGNNTEGRVTVVFRGNWAQSTDLARTNVQGLELVEST* |
| Ga0182024_100019747 | F003186 | N/A | VINPKTILGEWVTALQSCPELVTAIGGDGANVRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE* |
| Ga0182024_100019748 | F023143 | AGGAG | MDGVFMQSPEGEMKEVEATAAALTPLMVAGWHQVPPPVATNQKPPTAAEEKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |