Scaffold Ga0182024_10001946

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10001946
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52104
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (58.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022469	Metagenome / Metatranscriptome	214	Y
F048275	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000194610	F048275	GAGG	METTRKRLLYIMVGCAFGHLLTGALPLAAQDDCKLVLDAMIKLFDTPTHAYVTMDLTGKPQTGESIYAGGLVYAKNDGKWSAGSTTKEIKEIAEKNRQNNKTTCRYLKDEPVNGEMAAVYSVHEVSPKSTSDSKTWIAKAKGLPLRSDIDLGGGSHISTRYEYGNVKPPM*
Ga0182024_1000194613	F022469	N/A	MAEPERDPMVYTEEEVEVDAETAAAIDRGIRAADEGRVVSSEDVRKLIPQWISRFSTQNPR*