Scaffold Ga0182024_10000785

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000785
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83414
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (61.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009766	Metagenome / Metatranscriptome	313	Y
F081654	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000078562	F081654	AGGA	MPFPAVLVALLITVFSYPTRAQTSSEASKPVEWKSVSFAIVRFNDEAPASWNIYHTSKRGVLLVKLWKRYLLVNISEQQVFDIDPHTVKPQGDGVQWSSSDMPEEPLEIAEWKDRNVGPVERIRFRLGKDGHILELQLPLRADGKPAY*
Ga0182024_1000078564	F009766	N/A	MDECPSCGLTSSIAELVFRPRFMKRTAVFLAGSLLFPYVSQLYPPLDLDWMLVFFGLIFFVGLTVAVFVDRGARNRQDIEVLKRIYAGFIPLPWILAATLFLNGKLDSPKNVVYYPTTVQSRFNMRGIVRGSRRLFVRSLRPGQKVERLAVDVDDYDRFHDGDAVIVGVAPGALGINWFYGIYRR*