Scaffold Ga0182024_10000642

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000642
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90432
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (53.66%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F001591	Metagenome / Metatranscriptome	667	Y
F007333	Metagenome / Metatranscriptome	353	Y
F039319	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000064229	F039319	N/A	METLLLVTVLAGTLILLGFSVVLLRRISAAPQVDVKAEVAGQLERLGTSLGQKFSAATADMATRPEQRRDGHD*
Ga0182024_1000064236	F007333	AGGAGG	VHEELHHARSLGLSVALGAAMGAALGAVTGHVGIWVAAGIAAYIAISLVGGAWRNKRNN*
Ga0182024_1000064244	F000858	GAGG	MKGNNAYLFAAYAVTWIIHITYLATIVSRYSRLKREIGNLRKGR*
Ga0182024_1000064256	F001591	GGAG	MDRRKERRLNLELPVRIWGVDKMAHPFAELARVRNVSDHGAVLVGVRSKIQTGEVLDVQLGESRTQFRIVWVSLSGEAGIQALAFEPPILGIGLPKVFEMVGTG*