Scaffold Ga0182024_10000582

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000582
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94850
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (61.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000439	Metagenome / Metatranscriptome	1137	Y
F000985	Metagenome / Metatranscriptome	813	Y
F007540	Metagenome / Metatranscriptome	349	Y
F072652	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100005823	F007540	GAGG	MKLAGLLLLVAGWAIVVAAVALLPGAGARVGFVLAGVAVELFGLALAVRSHLVLPTEGE*
Ga0182024_1000058253	F000985	AGG	MKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKEQMAEAPKPTLTAAPSQQPVRIPPAVAAQGGTAPARVAGWEDAAKRWP*
Ga0182024_100005827	F072652	AGGAG	MATAETHGIGKYVAVYLCLVVLTALQFYIGYQNIEGSALMVRVLTFGIIESILVVVFWMNLGSEKPVFIKFVVFFTLFVLLTFNYSWTDSFRILLFRVTGIGPS*
Ga0182024_1000058271	F000439	GGAGG	MEVAKNSAGPAINLPAISAQANSISAQQVVKAAHEELLHLMAQRAEIMKRIGTVKQTIAGLANIFGDQVLGDDLLELIDRKPNGRQPGFTKACRRVLMEVRRPLGAREVCAELERYAPAILARHKDPLASVTTVLNRLVEYGEARSLSNDRGRRVWEWISDTEAHADAMPSRRMA*