Scaffold Ga0182024_10000354

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000354
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117465
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (62.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000323	Metagenome / Metatranscriptome	1300	Y
F003754	Metagenome / Metatranscriptome	470	Y
F009817	Metagenome / Metatranscriptome	312	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100003546	F000323	GAGG	MRKIWIVTLLLSGRLLLAQDSHPATSDLATKDSKGQATLQGCVSRSSGDYTLIKQNPAMTYELQGSRKIKLRHYLGQRVEVTGSESPTMSSSSDAMNRTGSAAPVTLTITSIRTIDKDCRIR*
Ga0182024_100003547	F003754	AGG	MLLQRENGKQYLYVQQAAKQGFMVVDVSKPDKPSLLKRSAESNQSTSGNLQMVTPDVAIAEGPEKTPTTLTSSNHPTETVRVLDLSDPRNPKTLETFNKVTSILPDGGHSLIYLTNNEGLWILRYNHPSLLEPARKKPPCDSNSEIMAMPPDCD*
Ga0182024_1000035497	F009817	AGGTGG	MPIFTNVLRRNWLSAILQPRTAILLGLLGLCRPAVSQEVSAALLQPAAMESSSFTPSPAFTPARPATLPEATHRFWDRENTLLFATSAAFNAADFIVTRDNLRSGGKELNPVTRVFSGSTPGLAVNFAGETAGVVALSYFFHKTGHHNLERFTSMLNIGSSAAAVTFDLAHR*