Scaffold Ga0182024_10000299

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0182024_10000299

Scaffold Ga0182024_10000299

Overview

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10000299 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	124701
Total Scaffold Genes	116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (69.83%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004700	Metagenome / Metatranscriptome	427	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000029984	F004700	N/A	LFQGQAVPANQIHDFHPPISPSGLYWVVAVPEDGLRFSTDGNSCKLEMREVAVVDQPRWPAFDSVATPARMSFKMIWKSNGESVRYEDAPRHFRFSGTRATCNLEAQVEVPSAGFSWKSDPLETSKCDFAIIGDEVNGRYYDG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.