NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10000174

Scaffold Ga0182024_10000174


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10000174 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)150401
Total Scaffold Genes149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (60.40%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F000359Metagenome / Metatranscriptome1236Y
F000912Metagenome / Metatranscriptome839Y
F001885Metagenome / Metatranscriptome622Y
F006274Metagenome / Metatranscriptome377Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_10000174124F006274GAGMADGQRHNDSSHKHPRHAIYATEASGLLLVAFLLLALTVVRYWHVIHWSVR*
Ga0182024_10000174136F001885AGAAGMSQEFLSVAIWEPLPGMEAAALATIRELNAIVLKNGYGRDLLYRGSDSHYVLLRYWNSEQARSAAQEDPELLRCWARLGNEIHILKVYERLEEIEA*
Ga0182024_1000017457F000238GGAMPPTPRPPRWYAIPVRVLLLTFIGTLISFALSLLFGIIGTIVLSALHHVHPNMTIAYRVVALPTAIVTGFVVFVLALIMEIRHHRQSKTLAAIERMS*
Ga0182024_1000017474F000359GGAGMSGQVILYFEDQADALRFALAAGSVMAGDDARATDDLVQETSRVSRIRIDAANAGKIKKPAPEHVA*
Ga0182024_1000017482F000912GGAMALDAFVRCTCIRDGKAKPHPFPERLTFDESGEPSLTGDPTEEEWDAHDKWLADSCEHEGFILSFFLGNITKVGNLRSFLRHLQGKPGPRFPILLEKVLYDGTHTGDRIPIKQSPALLKEVNTVLHSSDILADSEKEFFTNMKLLCEASIATGNPIMF*
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