Scaffold Ga0182024_10000062

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000062
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 198627
• Total Scaffold Genes: 184
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (58.70%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000870	Metagenome / Metatranscriptome	851	Y
F000883	Metagenome / Metatranscriptome	849	Y
F001485	Metagenome / Metatranscriptome	686	Y
F002492	Metagenome / Metatranscriptome	554	Y
F003336	Metagenome / Metatranscriptome	493	Y
F005270	Metagenome / Metatranscriptome	406	Y
F005581	Metagenome / Metatranscriptome	396	Y
F016467	Metagenome / Metatranscriptome	247	Y
F022234	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000006211	F003336	GGAGG	MSANGSAAYAVYPRNVALPDVVSALNQAGFQNEDICMVLSPAHPVATGVGDAKIGGTEKDESASNARMIGWFSKFGAVVIPTVGFFIRSHAFFQALLTEQNFPALSRGSRTLLGLGFSEDEAKRLGHQLCDVGALVYVSCRESHRADWAIDLLRKAGAREAAGLRMARAAAA*
Ga0182024_10000062120	F005270	GGAGG	MERRIDTESSDEISSEDLASVVASLEPDQLISTKEKHHCPRRQLTPTEMILFWALRFYLVFMFAVVIYQVWTNVR*
Ga0182024_10000062140	F001485	N/A	MQRKIFWLTFILLGLVADFLLPFWWAFFATIPIVFISWWVAYRSNWFE*
Ga0182024_1000006215	F016467	GAG	MTNKSAQTLPPAKNLKRSFECAVRDIYQVGLTGKVSQYRTPIVQRAGTTIGGSPVDAEKRALSDAARALAQLWKVSPSR*
Ga0182024_1000006216	F002492	N/A	MLYQAALFETDRSKVTERIAEAEQAILFRMRELFVIPTDHIEEDVVLDDALYALRALRNCVHNELAAA*
Ga0182024_10000062160	F000870	GGA	MDRIKEDSRTLPQKTARELIWTSSHAFRGWTCSQCEWNSPLPTLLEDPEAKTAFDRLAAAKFRDHKCAEHLSRLASADDADSFTPRIRKLVTQGFKPKDAVKIFLQEIALEYRNQPKVLAQAQADGEDFLRRVRAGLI*
Ga0182024_1000006239	F022234	N/A	LHAQAPFASAEPEAPTLFIEPSTPVVSKPSDLTLEHRFWDKQNCALFVAAAALNTADLAVTRANLQSGGQELNPVVRMFGRTTAGLSVNFIGETVGVVSLSYFFHKTGHHKLERAVSMFNMASSAGAVSYDLMHR*
Ga0182024_100000625	F000883	GGAG	MSGQVVLYFEDQADALRFALAAGSVMAGEGAKVSSDLVQGTARVTRIRLDAVNAGNSKKPNPVRVA*
Ga0182024_1000006297	F005581	N/A	MKAASGEIFGEKYRVVAVESQALTIRGVRSGKVLTIMNPDPDTPLTPAEYPPGKLIALSDPSASPAN*